Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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Feb 19, 2026 - Python
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deconvolution
Here are 83 public repositories matching this topic...
Holistically-Nested Edge Detection
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Feb 15, 2023 - Python
Tensorflow implementation : U-net and FCN with global convolution
computer-vision tensorflow kaggle kaggle-competition classification autoencoder segmentation fcn upsampling unet semantic-segmentation fully-convolutional-networks deconvolution image-mask masking u-net global-convolution-network carvana large-kernels transpose-convolution
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May 16, 2019 - Python
Deep Learning based cell composition analysis with Scaden.
machine-learning bioinformatics rna-seq deep-learning deconvolution single-cell-rna-seq cell-composition-analysis
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Nov 5, 2024 - Python
Example of Deconvnet in PyTorch for VGG16
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Aug 30, 2017 - Python
Python implementation of bulk RNAseq deconvolution algorithms
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Jul 21, 2025 - Python
A general framework for optimizing DNN dataflow on systolic array
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Jan 2, 2021 - Python
Blind deconvolution of motion blur
deep-learning convolutional-neural-networks motion-blur inverse-problems deconvolution motion-estimation deblurring wiener-filter motion-blur-elimination blind-deconvolution linear-blurs
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Feb 2, 2023 - Python
Iterative unfolding for Python
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Oct 17, 2020 - Python
Pixel Consensus Voting for Panoptic Segmentation (CVPR 2020)
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May 26, 2021 - Python
🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.
visualization python machine-learning bioinformatics genomics computational-biology pytorch spatial-analysis single-cell deconvolution spatial-transcriptomics scanpy spatial-domains squidpy llm-agent cell-communication claude-desktop agentic-ai model-context-protocol mcp-server
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Mar 16, 2026 - Python
Use CUDA for eBeam Lithography Simulation
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Dec 13, 2019 - Python
[MICCAI 2023] This is the official code for the paper "A Feature-Driven Richardson-Lucy Deconvolution Network"
deep-learning fluorescence microscopy deconvolution volumetric-data deblurring denoising light-sheet
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Oct 6, 2023 - Python
This python package allows the user to retrieve the wavefront aberrations in an optical system using the powerful tool of Phase Diversity, and use the PSF (MTF) to restore aberrated data.
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Apr 5, 2023 - Python
Convolution and Transposed Convolution in a Matrix Multiplication View
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Apr 18, 2021 - Python
Deep Deconvolution for Seismic Waves with Real and Simulated Distributed Acoustic Sensing Data: State-of-the-Art Review
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Dec 18, 2023 - Python
Implementation of deconvolution algorithms using torch.
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Oct 19, 2022 - Python
Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.
python bioinformatics computational-biology single-cell deconvolution spatial-transcriptomics scanpy visium cell-type-deconvolution
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Mar 16, 2026 - Python
A Python package for Poisson joint likelihood deconvolution
pytorch image-analysis deconvolution gamma-ray-astronomy maximum-a-posteriori-estimation x-ray-astronomy
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Oct 8, 2025 - Python
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