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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.1k 251

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 487 112

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 426 51

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 398 67

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 406 75

6. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 330 41