Add mcse plots to mcmc-diagnostics

.Rbuildignore

@@ -1,13 +1,13 @@
-^CRAN-RELEASE$
-^.*\.Rproj$
-^\.Rproj\.user$
-LICENSE
-^\.travis\.yml$
-^README\.md$
-.gitignore
-^cran-comments\.md$
-^revdep$
-man-roxygen/*
-images/*
-book/*
-docs/*
+^CRAN-RELEASE$
+^.*\.Rproj$
+^\.Rproj\.user$
+LICENSE
+^\.travis\.yml$
+^README\.md$
+.gitignore
+^cran-comments\.md$
+^revdep$
+man-roxygen/*
+images/*
+book/*
+docs/*

.gitignore

@@ -1,13 +1,13 @@
-.Rproj.user
-.Rhistory
-.RData
-.Ruserdata
-inst/doc
-
-tests/testthat/Rplots.pdf
-
-.DS_Store
-
-cran-comments.md
-revdep/*
-CRAN-RELEASE
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+inst/doc
+
+tests/testthat/Rplots.pdf
+
+.DS_Store
+
+cran-comments.md
+revdep/*
+CRAN-RELEASE

.travis.yml

@@ -1,23 +1,23 @@
-language: r
-r:
-  - release
-  - devel
-cache: packages
-
-r_github_packages:
-  - r-lib/covr
-
-r_build_args: '--no-build-vignettes'
-r_check_args: '--ignore-vignettes'
-warnings_are_errors: true
-
-env:
-- _R_CHECK_FORCE_SUGGESTS_=false NOT_CRAN=true MAKEFLAGS=-j2
-
-before_install:
-  - mkdir -p ~/.R
-  - echo "CXX14FLAGS=-O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function  -Wno-macro-redefined" >> ~/.R/Makevars
-  - echo "CXX14=g++ -std=c++1y -fPIC" >> ~/.R/Makevars
-
-after_success:
-  - Rscript -e 'covr::codecov()'
+language: r
+r:
+  - release
+  - devel
+cache: packages
+
+r_github_packages:
+  - r-lib/covr
+
+r_build_args: '--no-build-vignettes'
+r_check_args: '--ignore-vignettes'
+warnings_are_errors: true
+
+env:
+- _R_CHECK_FORCE_SUGGESTS_=false NOT_CRAN=true MAKEFLAGS=-j2
+
+before_install:
+  - mkdir -p ~/.R
+  - echo "CXX14FLAGS=-O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function  -Wno-macro-redefined" >> ~/.R/Makevars
+  - echo "CXX14=g++ -std=c++1y -fPIC" >> ~/.R/Makevars
+
+after_success:
+  - Rscript -e 'covr::codecov()'

DESCRIPTION

@@ -1,55 +1,55 @@
-Package: bayesplot
-Type: Package
-Title: Plotting for Bayesian Models
-Version: 1.7.1
-Date: 2019-11-25
-Authors@R: c(person("Jonah", "Gabry", role = c("aut", "cre"), email = "[email protected]"),
-             person("Tristan", "Mahr", role = "aut"),
-             person("Paul-Christian", "Bürkner", role = "ctb"),
-             person("Martin", "Modrák", role = "ctb"),
-             person("Malcolm", "Barrett", role = "ctb"))
-Maintainer: Jonah Gabry <[email protected]>
-Description: Plotting functions for posterior analysis, MCMC diagnostics,
-    prior and posterior predictive checks, and other visualizations 
-    to support the applied Bayesian workflow advocated in
-    Gabry, Simpson, Vehtari, Betancourt, and Gelman (2019) <doi:10.1111/rssa.12378>.
-    The package is designed not only to provide convenient functionality 
-    for users, but also a common set of functions that can be easily used by 
-    developers working on a variety of R packages for Bayesian modeling, 
-    particularly (but not exclusively) packages interfacing with 'Stan'.
-License: GPL (>= 3)
-LazyData: TRUE
-URL: https://mc-stan.org/bayesplot
-BugReports: https://github.com/stan-dev/bayesplot/issues/
-SystemRequirements: pandoc (>= 1.12.3), pandoc-citeproc
-Depends:
-    R (>= 3.1.0)
-Imports:
-    dplyr (>= 0.8.0),
-    ggplot2 (>= 2.2.1),
-    ggridges,
-    glue,
-    reshape2,
-    rlang (>= 0.3.0),
-    stats,
-    tibble,
-    tidyselect,
-    utils
-Suggests: 
-    gridExtra (>= 2.2.1),
-    hexbin,
-    knitr (>= 1.16),
-    loo (>= 2.0.0),
-    RColorBrewer,
-    rmarkdown (>= 1.0.0),
-    rstan (>= 2.17.1),
-    rstanarm (>= 2.17.4),
-    rstantools (>= 1.5.0),
-    scales,
-    shinystan (>= 2.3.0),
-    testthat (>= 2.0.0),
-    vdiffr
-RoxygenNote: 7.0.1
-VignetteBuilder: knitr
-Encoding: UTF-8
-Roxygen: list(markdown = TRUE)
+Package: bayesplot
+Type: Package
+Title: Plotting for Bayesian Models
+Version: 1.7.1
+Date: 2019-11-25
+Authors@R: c(person("Jonah", "Gabry", role = c("aut", "cre"), email = "[email protected]"),
+             person("Tristan", "Mahr", role = "aut"),
+             person("Paul-Christian", "Bürkner", role = "ctb"),
+             person("Martin", "Modrák", role = "ctb"),
+             person("Malcolm", "Barrett", role = "ctb"))
+Maintainer: Jonah Gabry <[email protected]>
+Description: Plotting functions for posterior analysis, MCMC diagnostics,
+    prior and posterior predictive checks, and other visualizations 
+    to support the applied Bayesian workflow advocated in
+    Gabry, Simpson, Vehtari, Betancourt, and Gelman (2019) <doi:10.1111/rssa.12378>.
+    The package is designed not only to provide convenient functionality 
+    for users, but also a common set of functions that can be easily used by 
+    developers working on a variety of R packages for Bayesian modeling, 
+    particularly (but not exclusively) packages interfacing with 'Stan'.
+License: GPL (>= 3)
+LazyData: TRUE
+URL: https://mc-stan.org/bayesplot
+BugReports: https://github.com/stan-dev/bayesplot/issues/
+SystemRequirements: pandoc (>= 1.12.3), pandoc-citeproc
+Depends:
+    R (>= 3.1.0)
+Imports:
+    dplyr (>= 0.8.0),
+    ggplot2 (>= 2.2.1),
+    ggridges,
+    glue,
+    reshape2,
+    rlang (>= 0.3.0),
+    stats,
+    tibble,
+    tidyselect,
+    utils
+Suggests: 
+    gridExtra (>= 2.2.1),
+    hexbin,
+    knitr (>= 1.16),
+    loo (>= 2.0.0),
+    RColorBrewer,
+    rmarkdown (>= 1.0.0),
+    rstan (>= 2.17.1),
+    rstanarm (>= 2.17.4),
+    rstantools (>= 1.5.0),
+    scales,
+    shinystan (>= 2.3.0),
+    testthat (>= 2.0.0),
+    vdiffr
+RoxygenNote: 7.0.1
+VignetteBuilder: knitr
+Encoding: UTF-8
+Roxygen: list(markdown = TRUE)