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Description
Bug description
Hi,
I've just started getting what appears to be an error with table crossref.lua. This appeared all of a sudden (within the last two weeks). I'm on Mac OS 13.2.1 (22D68), with Quarto v1.78.0 through VSCode 1.76.2. I think everything is updated (R ver 4.2.3) and it worked just a couple of weeks ago and now the render to .docx fails with:
Error running filter /Applications/quarto/share/filters/crossref/crossref.lua:
table expected, got Inline
I'm using the gt() (very. ‘0.6.0’) package for the table I am rendering. Any help would be appreciated. Quarto check below
Thanks
quarto check
[✓] Checking Quarto installation......OK
Version: 1.2.313
Path: /Applications/quarto/bin
[✓] Checking basic markdown render....OK
[✓] Checking Python 3 installation....OK
Version: 3.9.6
Path: /Applications/Xcode.app/Contents/Developer/usr/bin/python3
Jupyter: (None)
Jupyter is not available in this Python installation.
Install with python3 -m pip install jupyter
[✓] Checking R installation...........OK
Version: 4.2.3
Path: /Library/Frameworks/R.framework/Resources
LibPaths:
- /Users/noble/Library/R/arm64/4.2/library
- /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library
rmarkdown: 2.20.1
[✓] Checking Knitr engine render......OK
Reproducible Example. .qmd file:
---
title: "test"
crossref:
fig-title: 'Figure'
fig-labels: arabic
title-delim: "-"
fig-prefix: "Figure"
tbl-labels: "Table"
---
@tbl-tabs1
```{r}
#| label: tbl-tabs1
#| tbl-cap: Test
install.packages("tidyverse"); library(tidyverse)
install.packages("gt"); library(gt)
tabs1 <- data.frame(matrix(rnorm(5*11, 0, 2), ncol = 5, nrow = 11))
gt(tabs1) %>%
fmt_number(columns = 2:5, decimals = 2) %>%
tab_row_group(label = "Fixed Effects", rows = 1:7) %>%
tab_row_group(label = "Random Effects", rows = 8:11) %>%
tab_style(style = list(cell_text(weight = "bold")),
locations = list(cells_column_labels(), cells_row_groups())) %>%
opt_table_lines(extent = "none") %>%
tab_style(style = cell_borders(sides = c("top", "bottom")),
locations = list(cells_column_labels())) %>%
tab_style(style = cell_borders(sides = "bottom", weight = px(2)),
locations = cells_body(rows = 7))
```Which results in a VSCode error:
Error running filter /Applications/quarto/share/filters/crossref/crossref.lua:
table expected, got Inline
as well as an Error in RStudio (2023.03.0+386 (2023.03.0+386)).
Error running filter /Applications/quarto/share/filters/crossref/crossref.lua:
PandocLuaError "all choices failed\n\twhile retrieving stringifyable element"
stack traceback:
/Applications/quarto/share/filters/crossref/crossref.lua:2660: in function 'processRawTable'
/Applications/quarto/share/filters/crossref/crossref.lua:2484: in local 'fn'
/Applications/quarto/share/filters/crossref/crossref.lua:1239: in function </Applications/quarto/share/filters/crossref/crossref.lua:1233>
Checklist
- Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- Please format your issue so it is easier for us to read the bug report.
- Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- Please document the operating system you're running. If on Linux, please provide the specific distribution.
- Please provide the output of
quarto checkso we know which version of quarto and its dependencies you're running.