build: Rebase dev onto main #1322
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Release 0.14.1
updates: - [github.com/psf/black: 23.3.0 → 23.7.0](psf/black@23.3.0...23.7.0) - [github.com/pycqa/flake8: 6.0.0 → 6.1.0](PyCQA/flake8@6.0.0...6.1.0)
* Add multiple build platforms * Automatically update Dockerhub description * Launch Python instead of Bash by default * Change `omlp` directory name to less cryptic `openml` * Change directory to `openml` for running purpose of running script For mounted scripts, instructions say to mount them to `/openml`, so we have to `cd` before invoking `python`. * Update readme to reflect updates (python by default, rename dirs) * Add branch/code for doc and test examples as they are required * Ship docker images with readme * Only update readme on release, also try build docker on PR * Update the toc descriptions
* carefully replaced minio with parquet * fix: corrected some mistakes * fix: restored the instances of minio * fix: updated the documentation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add #1280 I used a `next` header instead of a specific version since we don't know if it will be 0.15.0 or 0.14.2. We can change it before the next release. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Pieter Gijsbers <[email protected]> Co-authored-by: Lennart Purucker <[email protected]>
* Extract mocked_perform_api_call because its independent of object * Remove _multiprocess_can_split_ as it is a nose directive and we use pytest * Convert test list all * Add markers and refactor test_list_all_for_tasks for pytest * Add cache marker * Converted remainder of tests to pytest
Add documentation and type hints for the remaining attributes of classes and functions. --------- Co-authored-by: Lennart Purucker <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/psf/black: 23.7.0 → 23.11.0](psf/black@23.7.0...23.11.0) - [github.com/pre-commit/mirrors-mypy: v1.4.1 → v1.7.0](pre-commit/mirrors-mypy@v1.4.1...v1.7.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/psf/black: 23.11.0 → 23.12.1](psf/black@23.11.0...23.12.1) - [github.com/pre-commit/mirrors-mypy: v1.7.0 → v1.8.0](pre-commit/mirrors-mypy@v1.7.0...v1.8.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [docker/login-action](https://github.com/docker/login-action) from 2 to 3. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](docker/login-action@v2...v3) --- updated-dependencies: - dependency-name: docker/login-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 4 to 5. - [Release notes](https://github.com/docker/metadata-action/releases) - [Upgrade guide](https://github.com/docker/metadata-action/blob/master/UPGRADE.md) - [Commits](docker/metadata-action@v4...v5) --- updated-dependencies: - dependency-name: docker/metadata-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 2 to 3. - [Release notes](https://github.com/docker/setup-qemu-action/releases) - [Commits](docker/setup-qemu-action@v2...v3) --- updated-dependencies: - dependency-name: docker/setup-qemu-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4 to 5. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@v4...v5) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Add more type annotations * add to progress rst --------- Co-authored-by: Lennart Purucker <[email protected]>
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2 to 3. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@v2...v3) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* rework tagging test adjusted for new server specification * update progress.rst
* ci: Migrate everything to pyproject.toml * style: Apply ruff fixes * style: Apply (more) ruff fixes * style(ruff): Add some file specific ignores * ci: Fix build with setuptools * ci(ruff): Allow prints in cli.py * fix: Circular import * test: Use raises(..., match=) * fix(cli): re-add missing print statements * fix: Fix some over ruff-ized code * add make check to documentation * ci: Change to `build` for sdist * ci: Add ruff to `"test"` deps --------- Co-authored-by: Lennart Purucker <[email protected]>
* fix: Chipping away at ruff lints * fix: return lockfile path * Update openml/config.py * Update openml/runs/functions.py * Update openml/tasks/functions.py * Update openml/tasks/split.py * Update openml/utils.py * Update openml/utils.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update openml/config.py * Update openml/testing.py * Update openml/utils.py * Update openml/config.py * Update openml/utils.py * Update openml/utils.py * add concurrency to workflow calls * adjust docstring * adjust docstring * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: Lennart Purucker <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Lennart Purucker <[email protected]>
* update tagging constraints * openml python tests * small fix
updates: - https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit - [github.com/astral-sh/ruff-pre-commit: v0.1.5 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.5...v0.1.11) - [github.com/python-jsonschema/check-jsonschema: 0.27.1 → 0.27.3](python-jsonschema/check-jsonschema@0.27.1...0.27.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* style: Fix linting split.py * typing: Fix mypy errors split.py * typing: data_feature * typing: trace * more linting fixes * typing: finish up trace * typing: config.py * typing: More fixes on config.py * typing: setup.py * finalize runs linting * typing: evaluation.py * typing: setup * ruff fixes across different files and mypy fixes for run files * typing: _api_calls * adjust setup files' linting and minor ruff changes * typing: utils * late night push * typing: utils.py * typing: tip tap tippity * typing: mypy 78, ruff ~200 * refactor output format name and minor linting stuff * other: midway merge * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * typing: I'm runnign out of good messages * typing: datasets * leinting for flows and some ruff changes * no more mypy errors * ruff runs and setups * typing: Finish off mypy and ruff errors Co-authored-by: Bilgecelik <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * style: File wide ignores of PLR0913 This is because the automated pre-commit.ci bot which made automatic commits and pushes would think the `noqa` on the individualy overloaded functions was not needed. After removing the `noqa`, the linter then raised the issue --------- Co-authored-by: eddiebergman <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bilgecelik <[email protected]>
* mark production tests * make production test run * fix test bug -1/N * add retry raise again after refactor * fix str dict representation * test: Fix non-writable home mocks * testing: not not a change * testing: trigger CI * typing: Update typing * ci: Update testing matrix * testing: Fixup run flow error check * ci: Manual dispatch, disable double testing * ci: Prevent further ci duplication * ci: Add concurrency checks to all * ci: Remove the max-parallel on test ci There are a lot less now and they cancel previous puhes in the same pr now so it shouldn't be a problem anymore * testing: Fix windows path generation * add pytest for server state * add assert cache state * some formatting * fix with cache fixture * finally remove th finally * doc: Fix link * update test matrix * doc: Update to just point to contributing * add linkcheck ignore for test server --------- Co-authored-by: eddiebergman <[email protected]>
Co-authored-by: Jan van Rijn <[email protected]>
* mark production tests * make production test run * fix test bug -1/N * add retry raise again after refactor * fix str dict representation * test: Fix non-writable home mocks * testing: not not a change * testing: trigger CI * typing: Update typing * ci: Update testing matrix * testing: Fixup run flow error check * ci: Manual dispatch, disable double testing * ci: Prevent further ci duplication * ci: Add concurrency checks to all * ci: Remove the max-parallel on test ci There are a lot less now and they cancel previous puhes in the same pr now so it shouldn't be a problem anymore * testing: Fix windows path generation * add pytest for server state * add assert cache state * some formatting * fix with cache fixture * finally remove th finally * doc: Fix link * update test matrix * doc: Update to just point to contributing * add linkcheck ignore for test server * add special case for class labels that are dtype string * fix bug and add test * formatting --------- Co-authored-by: eddiebergman <[email protected]>
* [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Update fetching a bucket from MinIO Previously, each dataset had their own bucket: https://openml1.win.tue.nl/datasets61/dataset_61.pq But we were advised to reduce the amount of buckets and favor hosting many objects in hierarchical structure, so we now have instead some prefixes to divide up the dataset objects into separate subdirectories: https://openml1.win.tue.nl/datasets/0000/0061/dataset_61.pq This commit has bypassed pre-commit. Tests should be updated too. * ci: Trigger ci * ci: Add some files to .gitignore --------- Co-authored-by: PGijsbers <[email protected]>
* Update progress.rst for minor release * update version number * fix typo
Co-authored-by: Pieter Gijsbers <[email protected]>
Codecov ReportAttention:
Additional details and impacted files@@ Coverage Diff @@
## develop #1322 +/- ##
===========================================
- Coverage 85.26% 84.29% -0.98%
===========================================
Files 38 38
Lines 5104 5252 +148
===========================================
+ Hits 4352 4427 +75
- Misses 752 825 +73 ☔ View full report in Codecov by Sentry. |
LennartPurucker
approved these changes
Jan 18, 2024
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To get dev to not have merge conflicts with main, we just make sure that dev has the correct ordered commit history of main as a rebase.
Doing it as a merge doesn't align the commit history, just the code changes