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  1. AllenNeuralDynamics/aind-exaspim-data-transformation AllenNeuralDynamics/aind-exaspim-data-transformation Public

    A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.

    Python

  2. AllenNeuralDynamics/aind-hcr-data-transformation AllenNeuralDynamics/aind-hcr-data-transformation Public

    Transforms CZI files into Zarr. This is meant to be used in the data transfer service.

    Python

  3. AllenNeuralDynamics/aind-proteomics-stitch AllenNeuralDynamics/aind-proteomics-stitch Public

    Stitching for the proteomics pipeline

    Python

  4. AllenNeuralDynamics/aind-spot-spectral-unmixing AllenNeuralDynamics/aind-spot-spectral-unmixing Public

    A capsule library for spectrally unmixing spots detected in multichannel lightsheet miscroscopy experiments.

    Python 1

  5. AllenNeuralDynamics/aind-z1-camera-alignment AllenNeuralDynamics/aind-z1-camera-alignment Public

    Code to align spectrally adjacent channels in Zeiss Lightsheet 7 (Z1) datasets

    Python

  6. jaydenleong/piponic jaydenleong/piponic Public

    This project aims to reduce urban food insecurity by reducing the cost and labour requirements of monitoring aquaponic or hydroponic food-growing systems.

    Python 1 1