Hi,
I ran the sh script like this
sh 1_sequence_prediction.sh /home/amit/Desktop/lingo1/regions/gain.HS.TEs.bed /home/amit/Desktop/lingo1/hg19/hg19.fa /home/amit/Desktop/lingo1/regions/TE_predict
1_sequence_prediction.sh: 20: set: Illegal option -o pipefail
Kindly help